Your question is missing examples of:
a. How you are referencing the relevant CDN hosted Javascript file in your Story, and which of the tippy.js related files in the /dist/ folder are you trying to use?
b. Exactly what you mean by "all elements with a title attribute".
eg. are these HTML elements you manually added to the Passage or are they the HTML elements generated by <<macros>>.
c. How exactly were you trying to call the relevant tippy(...) functions uses to initialise the tooltips defined within the current Passage.
Issues that need to be overcome to use the tippy.js library.
1. The "see almond readme incorrect module build no module named" error message.
That Javascript library is trying to create a Javascript Module and this is commonly done using a AMD library like the one on the Require.JS web-site, in Harlowe's case it uses the AMD library from the Almond repository.
Many developers (like tippy.js) use the AMD define({...}) function (without an ID parameter) to define their Modules but unfortunately the version of Almond that Harlowe is using insists that developers use the AMD define('module ID', {...}) function (without an ID parameter) instead. This is what is causing the error you are seeing.
To fix this error you will need to modify the tippy.js source code and change the line of code that references the AMD define() function to use the one that includes an ID parameter. Exactly how you do that depends on which tippy.js related script file you are using.
2. Changing the Scope of the tippy() function so that it is available within the context of a Passage.
Basically things created using Javascript exist within particular Scopes (Local, Private, Global, etc..) and things created in one non-Global scope are generally not available within another non-Global scope. The tippy() function is being created by that library is in a scope that isn't available within the scope of the Passage, nor within the scope of any <script> elements used within a Passage.
I was not able to change the scope of the tippy() function using the techniques I know, you will need the help of someone more experienced with Javascript & Modules to achieve this outcome.